Pseudomonas mendocina NK-01, MDS_2412

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02735
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006303 double-strand break repair via nonhomologous end joining
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02735
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pmk03450 Non-homologous end-joining 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:2.40.290.10:FF:000004 Non-homologous end joining protein Ku - - 4 177 9.2E-62
NCBIfam TIGR02772 JCVI: Ku protein IPR009187 Non-homologous end joining protein Ku, prokaryotic type 3 261 4.4E-97
CDD cd00789 KU_like IPR009187 Non-homologous end joining protein Ku, prokaryotic type 3 264 4.53683E-123
MobiDBLite mobidb-lite consensus disorder prediction - - 258 272 -
SUPERFAMILY SSF100939 SPOC domain-like IPR016194 SPOC-like, C-terminal domain superfamily 1 265 1.88E-54
MobiDBLite mobidb-lite consensus disorder prediction - - 258 286 -
Gene3D G3DSA:2.40.290.10 - IPR016194 SPOC-like, C-terminal domain superfamily 3 181 6.3E-19
PIRSF PIRSF006493 Prok_Ku IPR009187 Non-homologous end joining protein Ku, prokaryotic type 1 286 2.9E-96
PANTHER PTHR41251 NON-HOMOLOGOUS END JOINING PROTEIN KU IPR009187 Non-homologous end joining protein Ku, prokaryotic type 1 284 8.0E-96
Pfam PF02735 Ku70/Ku80 beta-barrel domain IPR006164 Ku70/Ku80 beta-barrel domain 12 194 3.3E-35
SMART SM00559 ku_4 IPR006164 Ku70/Ku80 beta-barrel domain 53 181 5.6E-43
Hamap MF_01875 Non-homologous end joining protein Ku [ku]. IPR009187 Non-homologous end joining protein Ku, prokaryotic type 2 261 31.249065

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.