Pseudomonas mendocina NK-01, MDS_2901

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02782
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005737 cytoplasm
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02782
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pmk02024 Quorum sensing 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 106 305 5.5E-54
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 10 272 1.06E-35
PANTHER PTHR30486 TWITCHING MOTILITY PROTEIN PILT - - 11 300 7.6E-56
CDD cd01130 VirB11-like_ATPase - - 125 288 5.01755E-65
NCBIfam TIGR02782 JCVI: P-type conjugative transfer ATPase TrbB IPR014149 Conjugative transfer, TrbB 1 296 4.9E-125
Gene3D G3DSA:3.30.450.90 - - - 2 103 8.4E-17
Pfam PF00437 Type II/IV secretion system protein IPR001482 Type II/IV secretion system domain 12 270 3.6E-50

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.