Pseudomonas mendocina NK-01, MDS_4328
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0004425 | indole-3-glycerol-phosphate synthase activity |
Inferred from Sequence Model
Term mapped from: InterPro:PF00218
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | pmk01230 | Biosynthesis of amino acids | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | pmk01130 | Biosynthesis of antibiotics | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | pmk01110 | Biosynthesis of secondary metabolites | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | pmk01100 | Metabolic pathways | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | pmk00400 | Phenylalanine, tyrosine and tryptophan biosynthesis | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF51366 | Ribulose-phoshate binding barrel | IPR011060 | Ribulose-phosphate binding barrel | 14 | 265 | 4.94E-86 |
| PANTHER | PTHR22854 | TRYPTOPHAN BIOSYNTHESIS PROTEIN | IPR045186 | Indole-3-glycerol phosphate synthase | 5 | 264 | 2.1E-84 |
| CDD | cd00331 | IGPS | IPR013798 | Indole-3-glycerol phosphate synthase domain | 43 | 263 | 4.23668E-113 |
| FunFam | G3DSA:3.20.20.70:FF:000024 | Indole-3-glycerol phosphate synthase | - | - | 1 | 267 | 5.9E-95 |
| Pfam | PF00218 | Indole-3-glycerol phosphate synthase | IPR013798 | Indole-3-glycerol phosphate synthase domain | 7 | 262 | 5.8E-100 |
| Hamap | MF_00134_B | Indole-3-glycerol phosphate synthase [trpC]. | IPR013798 | Indole-3-glycerol phosphate synthase domain | 5 | 265 | 36.425423 |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | IPR013785 | Aldolase-type TIM barrel | 1 | 271 | 8.4E-107 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.