Pseudomonas mendocina NK-01, MDS_4365

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0008270	zinc ion binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF01807	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003896	DNA primase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF01807	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003677	DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF01807	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006269	DNA replication, synthesis of RNA primer	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR01391	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006260	DNA replication	ISM Inferred from Sequence Model Term mapped from: InterPro:PF01807	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0016779	nucleotidyltransferase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF10410	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	pmk03030	DNA replication	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Pfam	PF08275	DNA primase catalytic core, N-terminal domain	IPR013264	DNA primase, catalytic core, N-terminal	126	254	3.1E-43
Hamap	MF_00974	DNA primase [dnaG].	IPR030846	DNA primase DnaG, bacteria	4	654	29.999405
PANTHER	PTHR30313	DNA PRIMASE	-	-	1	651	0.0
PIRSF	PIRSF002811	DnaG	IPR030846	DNA primase DnaG, bacteria	2	661	0.0
FunFam	G3DSA:3.90.980.10:FF:000001	DNA primase	-	-	111	242	1.5E-48
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	489	512	-
Pfam	PF08278	DNA primase DnaG DnaB-binding	IPR013173	DNA primase DnaG, DnaB-binding domain	529	651	4.0E-22
SMART	SM00400	primzinc3	IPR002694	Zinc finger, CHC2-type	36	90	6.8E-34
NCBIfam	TIGR01391	JCVI: DNA primase	IPR006295	DNA primase, DnaG	5	420	0.0
Gene3D	G3DSA:3.40.1360.10	-	-	-	243	370	4.3E-41
Gene3D	G3DSA:1.20.50.20	DnaG, RNA polymerase domain, helical bundle	-	-	371	427	1.0E-21
SUPERFAMILY	SSF57783	Zinc beta-ribbon	-	-	4	101	2.21E-37
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	427	519	-
Gene3D	G3DSA:1.10.860.10	DNAb Helicase; Chain A	IPR016136	DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal	514	663	2.8E-32
SMART	SM00493	toprim5	IPR006171	TOPRIM domain	261	332	8.4E-20
Pfam	PF01807	CHC2 zinc finger	IPR002694	Zinc finger, CHC2-type	6	100	8.9E-42
SMART	SM00766	dnag_dnab_bind_seq8d	IPR013173	DNA primase DnaG, DnaB-binding domain	525	653	1.4E-26
Gene3D	G3DSA:3.90.980.10	-	IPR037068	DNA primase, catalytic core, N-terminal domain superfamily	113	242	6.4E-48
Pfam	PF13662	Toprim domain	IPR006171	TOPRIM domain	261	327	3.6E-16
FunFam	G3DSA:3.90.580.10:FF:000001	DNA primase	-	-	1	101	5.1E-43
FunFam	G3DSA:3.40.1360.10:FF:000002	DNA primase	-	-	243	370	1.1E-53
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	427	450	-
SUPERFAMILY	SSF117023	DNA primase DnaG, C-terminal domain	-	-	524	653	9.55E-27
CDD	cd03364	TOPRIM_DnaG_primases	IPR034151	Bacterial DnaG primase, TOPRIM domain	261	342	8.41746E-34
SUPERFAMILY	SSF56731	DNA primase core	-	-	116	427	1.39E-109
Pfam	PF10410	DnaB-helicase binding domain of primase	IPR019475	DNA primase, DnaB-helicase binding domain	373	425	4.3E-11
Gene3D	G3DSA:3.90.580.10	-	IPR036977	DNA Primase, CHC2-type zinc finger	2	102	1.5E-36

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.