Pseudomonas mendocina NK-01, MDS_4453
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0004793 | threonine aldolase activity |
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF038940
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0016829 | lyase activity |
Inferred from Sequence Model
Term mapped from: InterPro:PF01212
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0006520 | cellular amino acid metabolic process |
Inferred from Sequence Model
Term mapped from: InterPro:PF01212
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0006567 | threonine catabolic process |
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF038940
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | pmk01110 | Biosynthesis of secondary metabolites | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | pmk00260 | Glycine, serine and threonine metabolism | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | pmk01130 | Biosynthesis of antibiotics | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | pmk01120 | Microbial metabolism in diverse environments | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | pmk01100 | Metabolic pathways | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | pmk01230 | Biosynthesis of amino acids | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Coils | Coil | Coil | - | - | 333 | 345 | - |
| FunFam | G3DSA:3.40.640.10:FF:000087 | L-threonine aldolase | - | - | 17 | 255 | 0.0 |
| PIRSF | PIRSF038940 | Low_specificity_LTA | IPR026273 | Low specificity L-threonine aldolase, bacteria | 5 | 345 | 0.0 |
| Pfam | PF01212 | Beta-eliminating lyase | IPR001597 | Aromatic amino acid beta-eliminating lyase/threonine aldolase | 7 | 297 | 1.3E-75 |
| Gene3D | G3DSA:3.90.1150.10 | Aspartate Aminotransferase, domain 1 | IPR015422 | Pyridoxal phosphate-dependent transferase, small domain | 9 | 336 | 0.0 |
| CDD | cd06502 | TA_like | - | - | 7 | 343 | 0.0 |
| FunFam | G3DSA:3.90.1150.10:FF:000069 | L-threonine aldolase | - | - | 248 | 336 | 3.1E-46 |
| Gene3D | G3DSA:3.40.640.10 | - | IPR015421 | Pyridoxal phosphate-dependent transferase, major domain | 17 | 255 | 0.0 |
| SUPERFAMILY | SSF53383 | PLP-dependent transferases | IPR015424 | Pyridoxal phosphate-dependent transferase | 7 | 343 | 8.43E-101 |
| PANTHER | PTHR48097 | L-THREONINE ALDOLASE-RELATED | - | - | 6 | 344 | 1.6E-48 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.