Pseudomonas mendocina NK-01, MDS_4532

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0004888 transmembrane signaling receptor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006935 chemotaxis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pmk02030 Bacterial chemotaxis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pmk02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd11386 MCP_signal - - 293 477 1.01506E-45
Gene3D G3DSA:1.10.287.950 - - - 220 500 8.2E-71
PANTHER PTHR43531 PROTEIN ICFG - - 1 516 5.7E-121
MobiDBLite mobidb-lite consensus disorder prediction - - 504 547 -
Pfam PF12729 Four helix bundle sensory module for signal transduction IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain 4 181 1.2E-15
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 385 414 8.9E-29
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 5 30 8.9E-29
SMART SM00283 MA_2 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 265 498 5.8E-76
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 279 308 8.9E-29
CDD cd19411 MCP2201-like_sensor IPR047347 Putative sensory transducer protein YvaQ-like, ligand-binding sensor domain 43 178 3.98387E-21
FunFam G3DSA:1.10.287.950:FF:000001 Methyl-accepting chemotaxis sensory transducer - - 218 499 1.1E-76
SUPERFAMILY SSF58104 Methyl-accepting chemotaxis protein (MCP) signaling domain - - 240 499 4.62E-64
Coils Coil Coil - - 455 500 -
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 356 383 8.9E-29
Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 325 410 1.2E-29
MobiDBLite mobidb-lite consensus disorder prediction - - 284 318 -
MobiDBLite mobidb-lite consensus disorder prediction - - 504 525 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.