Pseudomonas mendocina NK-01, MDS_4756

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00771
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0009306 protein secretion
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00771
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pmk02040 Flagellar assembly 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.10.8.540 FHIPEP family, domain 3 IPR042193 FHIPEP, domain 3 503 591 4.5E-17
PRINTS PR00949 Type III secretion system inner membrane A protein family signature IPR001712 Type III secretion system FHIPEP 32 45 9.6E-55
Gene3D G3DSA:3.40.30.60 FHIPEP family, domain 1 IPR042194 FHIPEP, domain 1 360 502 2.2E-42
PRINTS PR00949 Type III secretion system inner membrane A protein family signature IPR001712 Type III secretion system FHIPEP 236 250 9.6E-55
PRINTS PR00949 Type III secretion system inner membrane A protein family signature IPR001712 Type III secretion system FHIPEP 155 173 9.6E-55
Gene3D G3DSA:3.40.50.12790 FHIPEP family, domain 4 IPR042196 FHIPEP, domain 4 594 697 3.9E-20
Pfam PF00771 FHIPEP family IPR001712 Type III secretion system FHIPEP 25 689 0.0
PRINTS PR00949 Type III secretion system inner membrane A protein family signature IPR001712 Type III secretion system FHIPEP 69 88 9.6E-55
PIRSF PIRSF005419 FlhA IPR001712 Type III secretion system FHIPEP 1 698 0.0
PRINTS PR00949 Type III secretion system inner membrane A protein family signature IPR001712 Type III secretion system FHIPEP 136 152 9.6E-55
PRINTS PR00949 Type III secretion system inner membrane A protein family signature IPR001712 Type III secretion system FHIPEP 185 202 9.6E-55
PANTHER PTHR30161 FLAGELLAR EXPORT PROTEIN, MEMBRANE FLHA SUBUNIT-RELATED IPR001712 Type III secretion system FHIPEP 7 697 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.