Pseudomonas mendocina NK-01, MDS_4773

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0140359 ABC-type transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF006648
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF006648
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF006648
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0043190 ATP-binding cassette (ABC) transporter complex
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF006648
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pmk02010 ABC transporters 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF01061 ABC-2 type transporter IPR013525 ABC-2 type transporter, transmembrane domain 7 197 3.1E-14
PIRSF PIRSF006648 DrrB IPR000412 ABC-2 transporter 3 230 1.3E-18
PRINTS PR00164 ABC-2 type transport system membrane protein signature IPR000412 ABC-2 transporter 12 33 1.6E-10
PRINTS PR00164 ABC-2 type transport system membrane protein signature IPR000412 ABC-2 transporter 117 141 1.6E-10
PRINTS PR00164 ABC-2 type transport system membrane protein signature IPR000412 ABC-2 transporter 154 173 1.6E-10
PANTHER PTHR30413 INNER MEMBRANE TRANSPORT PERMEASE - - 6 234 2.6E-40

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.