Pseudomonas mendocina NK-01, MDS_4817

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF02311 AraC-like ligand binding domain IPR003313 AraC-type arabinose-binding/dimerisation domain 37 118 1.8E-9
SMART SM00342 aracneu4 IPR018060 DNA binding HTH domain, AraC-type 179 261 4.7E-25
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 162 213 2.96E-6
PANTHER PTHR11019 HTH-TYPE TRANSCRIPTIONAL REGULATOR NIMR - - 12 262 1.9E-81
Gene3D G3DSA:1.10.10.60 - - - 221 263 3.4E-10
PRINTS PR00032 AraC bacterial regulatory protein HTH signature IPR020449 Transcription regulator HTH, AraC- type 230 245 2.0E-6
Gene3D G3DSA:1.10.10.60 - - - 161 220 1.1E-10
Gene3D G3DSA:2.60.120.10 Jelly Rolls IPR014710 RmlC-like jelly roll fold 26 105 2.0E-9
PRINTS PR00032 AraC bacterial regulatory protein HTH signature IPR020449 Transcription regulator HTH, AraC- type 245 261 2.0E-6
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 216 262 7.62E-9
FunFam G3DSA:1.10.10.60:FF:000132 AraC family transcriptional regulator - - 160 263 2.6E-36
Pfam PF12833 Helix-turn-helix domain IPR018060 DNA binding HTH domain, AraC-type 187 262 3.6E-24
SUPERFAMILY SSF51182 RmlC-like cupins IPR011051 RmlC-like cupin domain superfamily 8 174 1.3E-18
CDD cd06124 cupin_NimR-like_N - - 24 118 1.73083E-36

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.