Pseudomonas syringae pv. tomato DC3000, PSPTO_1908 (pobR)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0003700 | DNA-binding transcription factor activity |
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0043565 | sequence-specific DNA binding |
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0006355 | regulation of transcription, DNA-templated |
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| PANTHER | PTHR43280 | ARAC-FAMILY TRANSCRIPTIONAL REGULATOR | - | - | 123 | 288 | 1.5E-25 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | IPR011051 | RmlC-like cupin domain superfamily | 41 | 158 | 1.33E-9 |
| Gene3D | G3DSA:1.10.10.60 | - | - | - | 186 | 289 | 1.3E-22 |
| CDD | cd06999 | cupin_HpaA-like_N | IPR047264 | HpaA-like, N-terminal cupin domain | 9 | 106 | 6.06629E-50 |
| Pfam | PF02311 | AraC-like ligand binding domain | IPR003313 | AraC-type arabinose-binding/dimerisation domain | 34 | 159 | 9.7E-6 |
| SMART | SM00342 | aracneu4 | IPR018060 | DNA binding HTH domain, AraC-type | 203 | 286 | 3.3E-22 |
| PRINTS | PR00032 | AraC bacterial regulatory protein HTH signature | IPR020449 | Transcription regulator HTH, AraC- type | 270 | 286 | 3.3E-6 |
| Pfam | PF12833 | Helix-turn-helix domain | IPR018060 | DNA binding HTH domain, AraC-type | 210 | 288 | 7.0E-19 |
| PRINTS | PR00032 | AraC bacterial regulatory protein HTH signature | IPR020449 | Transcription regulator HTH, AraC- type | 255 | 270 | 3.3E-6 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | IPR014710 | RmlC-like jelly roll fold | 30 | 148 | 1.9E-6 |
| SUPERFAMILY | SSF46689 | Homeodomain-like | IPR009057 | Homeobox-like domain superfamily | 242 | 288 | 4.93E-11 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.