Pseudomonas syringae pv. tomato DC3000, PSPTO_2104
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0022857 | transmembrane transporter activity |
Inferred from Sequence Model
Term mapped from: InterPro:PF07690
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
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| Biological Process | GO:0055085 | transmembrane transport |
Inferred from Sequence Model
Term mapped from: InterPro:PF07690
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| PANTHER | PTHR43528 | ALPHA-KETOGLUTARATE PERMEASE | - | - | 6 | 423 | 0.0 |
| Pfam | PF07690 | Major Facilitator Superfamily | IPR011701 | Major facilitator superfamily | 18 | 372 | 4.6E-25 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | IPR036259 | MFS transporter superfamily | 11 | 231 | 2.5E-33 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | IPR036259 | MFS transporter superfamily | 232 | 422 | 4.9E-16 |
| FunFam | G3DSA:1.20.1250.20:FF:000001 | Dicarboxylate MFS transporter | - | - | 9 | 226 | 6.8E-81 |
| Coils | Coil | Coil | - | - | 430 | 432 | - |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | IPR036259 | MFS transporter superfamily | 11 | 419 | 3.4E-63 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.