Pseudomonas syringae pv. tomato DC3000, PSPTO_2548

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0005524	ATP binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF07724	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0016887	ATPase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF07724	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	pst03070	Bacterial secretion system	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pst02025	Biofilm formation - Pseudomonas aeruginosa	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Coils	Coil	Coil	-	-	417	437	-
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	IPR027417	P-loop containing nucleoside triphosphate hydrolase	550	836	1.18E-54
PRINTS	PR00300	ATP-dependent Clp protease ATP-binding subunit signature	IPR001270	ClpA/B family	679	697	6.5E-31
PANTHER	PTHR11638	ATP-DEPENDENT CLP PROTEASE	-	-	132	849	0.0
CDD	cd19499	RecA-like_ClpB_Hsp104-like	-	-	569	770	1.03564E-79
Pfam	PF17871	AAA lid domain	IPR041546	ClpA/ClpB, AAA lid domain	347	440	7.5E-30
PRINTS	PR00300	ATP-dependent Clp protease ATP-binding subunit signature	IPR001270	ClpA/B family	650	668	6.5E-31
SMART	SM00382	AAA_5	IPR003593	AAA+ ATPase domain	203	349	1.9E-10
Gene3D	G3DSA:1.10.8.60	-	-	-	775	866	1.7E-8
Coils	Coil	Coil	-	-	507	527	-
Gene3D	G3DSA:3.40.50.300	-	IPR027417	P-loop containing nucleoside triphosphate hydrolase	554	770	1.7E-63
Pfam	PF07724	AAA domain (Cdc48 subfamily)	IPR003959	ATPase, AAA-type, core	601	766	5.0E-40
FunFam	G3DSA:3.40.50.300:FF:000025	ATP-dependent Clp protease subunit	-	-	554	770	1.4E-77
SMART	SM00382	AAA_5	IPR003593	AAA+ ATPase domain	601	742	2.7E-9
NCBIfam	TIGR03345	JCVI: type VI secretion system ATPase TssH	IPR017729	AAA+ ATPase ClpV1	14	853	0.0
Gene3D	G3DSA:3.40.50.300	-	IPR027417	P-loop containing nucleoside triphosphate hydrolase	168	352	9.9E-67
Gene3D	G3DSA:3.40.50.300	-	IPR027417	P-loop containing nucleoside triphosphate hydrolase	353	548	3.2E-44
SUPERFAMILY	SSF81923	Double Clp-N motif	IPR036628	Clp, N-terminal domain superfamily	18	122	2.35E-8
SMART	SM01086	ClpB_D2_small_2	IPR019489	Clp ATPase, C-terminal	772	864	1.8E-5
CDD	cd00009	AAA	-	-	188	339	2.84495E-15
PRINTS	PR00300	ATP-dependent Clp protease ATP-binding subunit signature	IPR001270	ClpA/B family	712	726	6.5E-31
Pfam	PF10431	C-terminal, D2-small domain, of ClpB protein	IPR019489	Clp ATPase, C-terminal	777	846	1.7E-9
FunFam	G3DSA:3.40.50.300:FF:000010	Chaperone clpB 1, putative	-	-	154	347	3.2E-85
PRINTS	PR00300	ATP-dependent Clp protease ATP-binding subunit signature	IPR001270	ClpA/B family	605	623	6.5E-31
Gene3D	G3DSA:1.10.1780.10	-	IPR036628	Clp, N-terminal domain superfamily	5	167	4.6E-18
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	IPR027417	P-loop containing nucleoside triphosphate hydrolase	165	521	2.43E-72
Pfam	PF00004	ATPase family associated with various cellular activities (AAA)	IPR003959	ATPase, AAA-type, core	208	339	2.2E-8

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.