Pseudomonas syringae pv. tomato DC3000, PSPTO_4023

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF118196 YaeB-like IPR036413 YaeB-like superfamily 10 230 1.96E-73
Pfam PF18389 TrmO C-terminal domain IPR041369 TrmO, C-terminal 164 225 1.2E-16
Gene3D G3DSA:2.40.30.70 - IPR036414 YaeB, N-terminal domain superfamily 2 145 1.2E-45
CDD cd09281 UPF0066 IPR023370 TrmO-like, N-terminal domain 16 142 1.3226E-58
Pfam PF01980 tRNA-methyltransferase O IPR023370 TrmO-like, N-terminal domain 30 147 2.0E-45
NCBIfam TIGR00104 JCVI: tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO IPR023370 TrmO-like, N-terminal domain 10 152 1.7E-46
Gene3D G3DSA:3.30.2310.10 - - - 146 233 1.0E-18
PANTHER PTHR12818 UNCHARACTERIZED IPR040372 YaeB-like 10 235 2.2E-63

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.