Pseudomonas savastanoi pv. phaseolicola 1448A, PSPPH_0980

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0030253 protein secretion by the type I secretion system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01842
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.20.1560.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0140359 ABC-type transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00664
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00664
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.20.1560.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016887 ATPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00382
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0030256 type I protein secretion system complex
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01842
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psp02010 ABC transporters 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:3.40.50.300:FF:001444 ABC transporter ATP-binding protein - - 325 557 3.4E-93
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 321 559 1.3E-71
NCBIfam TIGR01842 JCVI: type I secretion system permease/ATPase IPR010128 ATPase, type I secretion system, PrtD-like 13 556 0.0
Pfam PF00664 ABC transporter transmembrane region IPR011527 ABC transporter type 1, transmembrane domain 23 279 2.5E-15
Pfam PF00005 ABC transporter IPR003439 ABC transporter-like, ATP-binding domain 348 494 5.4E-29
MobiDBLite mobidb-lite consensus disorder prediction - - 564 587 -
Coils Coil Coil - - 297 317 -
PANTHER PTHR24222 ABC TRANSPORTER B FAMILY IPR039421 Type 1 protein exporter 9 555 1.7E-77
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 319 554 5.06E-65
SUPERFAMILY SSF90123 ABC transporter transmembrane region IPR036640 ABC transporter type 1, transmembrane domain superfamily 13 319 2.09E-42
CDD cd03246 ABCC_Protease_Secretion - - 330 543 1.3586E-80
Gene3D G3DSA:1.20.1560.10 ABC transporter type 1, transmembrane domain IPR036640 ABC transporter type 1, transmembrane domain superfamily 11 313 4.4E-29
Coils Coil Coil - - 549 569 -
CDD cd18586 ABC_6TM_PrtD_like IPR047957 Alkaline protease secretion ATP-binding protein AprD-like, 6TM domain 17 307 6.61072E-126
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 356 542 1.2E-14

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.