Pseudomonas savastanoi pv. phaseolicola 1448A, PSPPH_1162 (gcvP)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006544 glycine metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00461
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004375 glycine dehydrogenase (decarboxylating) activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00461
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006546 glycine catabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02347
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psp01130 Biosynthesis of antibiotics 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psp00630 Glyoxylate and dicarboxylate metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psp01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psp01110 Biosynthesis of secondary metabolites 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psp01200 Carbon metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psp00260 Glycine, serine and threonine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Hamap MF_00711 Glycine dehydrogenase (decarboxylating) [gcvP]. IPR003437 Glycine dehydrogenase (decarboxylating) 7 951 26.147501
Pfam PF02347 Glycine cleavage system P-protein IPR020581 Glycine cleavage system P protein 467 734 5.3E-10
FunFam G3DSA:3.40.640.10:FF:000007 glycine dehydrogenase (Decarboxylating), mitochondrial - - 522 753 1.1E-120
Gene3D G3DSA:3.90.1150.10 Aspartate Aminotransferase, domain 1 IPR015422 Pyridoxal phosphate-dependent transferase, small domain 83 410 6.6E-85
FunFam G3DSA:3.40.640.10:FF:000005 Glycine dehydrogenase (decarboxylating), mitochondrial - - 94 354 0.0
NCBIfam TIGR00461 JCVI: aminomethyl-transferring glycine dehydrogenase IPR003437 Glycine dehydrogenase (decarboxylating) 16 945 0.0
Pfam PF02347 Glycine cleavage system P-protein IPR020581 Glycine cleavage system P protein 16 440 0.0
Gene3D G3DSA:3.90.1150.10 Aspartate Aminotransferase, domain 1 IPR015422 Pyridoxal phosphate-dependent transferase, small domain 765 899 6.2E-46
Gene3D G3DSA:3.40.640.10 - IPR015421 Pyridoxal phosphate-dependent transferase, major domain 94 354 6.6E-85
FunFam G3DSA:3.90.1150.10:FF:000007 Glycine dehydrogenase (decarboxylating), mitochondrial - - 761 899 1.5E-72
Gene3D G3DSA:3.40.640.10 - IPR015421 Pyridoxal phosphate-dependent transferase, major domain 523 764 6.1E-72
SUPERFAMILY SSF53383 PLP-dependent transferases IPR015424 Pyridoxal phosphate-dependent transferase 16 441 4.96E-100
CDD cd00613 GDC-P IPR020581 Glycine cleavage system P protein 483 868 0.0
PANTHER PTHR11773 GLYCINE DEHYDROGENASE, DECARBOXYLATING IPR020581 Glycine cleavage system P protein 7 951 0.0
SUPERFAMILY SSF53383 PLP-dependent transferases IPR015424 Pyridoxal phosphate-dependent transferase 475 946 2.74E-103

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.