Pseudomonas savastanoi pv. phaseolicola 1448A, PSPPH_2978
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0033218 | amide binding |
Inferred from Sequence Model
Term mapped from: InterPro:cd06357
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | psp02024 | Quorum sensing | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | psp02010 | ABC transporters | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Gene3D | G3DSA:3.40.50.2300 | - | - | - | 9 | 337 | 1.6E-124 |
| SUPERFAMILY | SSF53822 | Periplasmic binding protein-like I | IPR028082 | Periplasmic binding protein-like I | 6 | 374 | 2.73E-87 |
| PANTHER | PTHR47628 | - | - | - | 4 | 367 | 1.3E-118 |
| CDD | cd06357 | PBP1_AmiC | IPR039570 | AmiC, periplasmic binding domain | 7 | 365 | 0.0 |
| Pfam | PF13433 | Periplasmic binding protein domain | - | - | 6 | 367 | 0.0 |
| Gene3D | G3DSA:3.40.50.2300 | - | - | - | 121 | 352 | 1.6E-124 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.