Pseudomonas savastanoi pv. phaseolicola 1448A, PSPPH_4012 (ttgR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00455
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00455 TetR bacterial regulatory protein HTH signature IPR001647 DNA-binding HTH domain, TetR-type 16 29 1.1E-11
Gene3D G3DSA:1.10.357.10 Tetracycline Repressor, domain 2 - - 1 210 7.0E-81
Pfam PF00440 Bacterial regulatory proteins, tetR family IPR001647 DNA-binding HTH domain, TetR-type 16 62 1.3E-17
PANTHER PTHR30055:SF173 HTH-TYPE TRANSCRIPTIONAL REGULATOR ACRR - - 1 213 5.7E-53
PRINTS PR00455 TetR bacterial regulatory protein HTH signature IPR001647 DNA-binding HTH domain, TetR-type 37 60 1.1E-11
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 2 77 6.16E-20
PANTHER PTHR30055 HTH-TYPE TRANSCRIPTIONAL REGULATOR RUTR - - 1 213 5.7E-53
Pfam PF08361 MAATS-type transcriptional repressor, C-terminal region IPR013572 Transcription regulator MAATS, C-terminal 84 204 8.9E-36
SUPERFAMILY SSF48498 Tetracyclin repressor-like, C-terminal domain IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily 84 203 1.11E-17

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.