Pseudomonas savastanoi pv. phaseolicola 1448A, PSPPH_4598 (rpoC)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01322
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01322
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006351 transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01322
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psp00240 Pyrimidine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psp00230 Purine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psp03020 RNA polymerase 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psp01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00663 rpolaneu7 IPR006592 RNA polymerase, N-terminal 235 514 0.0
Gene3D G3DSA:1.10.40.90 - - - 370 413 4.4E-21
Gene3D G3DSA:2.40.50.100 - - - 1023 1126 6.8E-31
Gene3D G3DSA:1.10.274.100 RNA polymerase Rpb1, domain 3 IPR042102 RNA polymerase Rpb1, domain 3 superfamily 564 640 2.2E-19
Coils Coil Coil - - 191 211 -
Gene3D G3DSA:2.40.50.100 - - - 1151 1215 6.0E-65
CDD cd01609 RNAP_beta'_N - - 15 813 0.0
FunFam G3DSA:1.10.40.90:FF:000001 DNA-directed RNA polymerase subunit beta - - 372 413 2.1E-22
FunFam G3DSA:1.10.150.390:FF:000002 DNA-directed RNA polymerase subunit beta'' - - 1316 1377 2.5E-32
NCBIfam TIGR02386 JCVI: DNA-directed RNA polymerase subunit beta' IPR012754 DNA-directed RNA polymerase, subunit beta-prime, bacterial type 19 1366 0.0
CDD cd02655 RNAP_beta'_C - - 909 1363 2.28595E-78
Gene3D G3DSA:4.10.860.120 RNA polymerase II, clamp domain IPR044893 RNA polymerase Rpb1, clamp domain superfamily 8 145 1.9E-23
Pfam PF04983 RNA polymerase Rpb1, domain 3 IPR007066 RNA polymerase Rpb1, domain 3 489 643 2.3E-29
Gene3D G3DSA:2.40.50.100 - - - 948 1022 3.4E-26
Gene3D G3DSA:1.10.274.100 RNA polymerase Rpb1, domain 3 IPR042102 RNA polymerase Rpb1, domain 3 superfamily 489 563 6.2E-22
SUPERFAMILY SSF64484 beta and beta-prime subunits of DNA dependent RNA-polymerase - - 15 1363 0.0
Pfam PF04997 RNA polymerase Rpb1, domain 1 IPR007080 RNA polymerase Rpb1, domain 1 16 342 3.9E-88
Gene3D G3DSA:1.10.1790.20 - - - 1135 1314 6.0E-65
Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. IPR012754 DNA-directed RNA polymerase, subunit beta-prime, bacterial type 14 1377 18.934139
Gene3D G3DSA:1.10.132.30 - IPR038120 RNA polymerase Rpb1, funnel domain superfamily 641 790 6.1E-68
Pfam PF00623 RNA polymerase Rpb1, domain 2 IPR000722 RNA polymerase, alpha subunit 389 485 4.1E-28
Pfam PF05000 RNA polymerase Rpb1, domain 4 IPR007083 RNA polymerase Rpb1, domain 4 674 763 8.0E-20
PANTHER PTHR19376 DNA-DIRECTED RNA POLYMERASE IPR045867 DNA-directed RNA polymerase, subunit beta-prime 23 1363 0.0
FunFam G3DSA:1.10.132.30:FF:000003 DNA-directed RNA polymerase subunit beta - - 638 790 3.8E-76
Pfam PF04998 RNA polymerase Rpb1, domain 5 IPR007081 RNA polymerase Rpb1, domain 5 766 1316 1.3E-78
FunFam G3DSA:4.10.860.120:FF:000001 DNA-directed RNA polymerase subunit beta - - 12 132 3.7E-68
Pfam PF00623 RNA polymerase Rpb1, domain 2 IPR000722 RNA polymerase, alpha subunit 344 385 1.4E-7
Gene3D G3DSA:2.40.40.20 - - - 332 486 5.6E-48
Gene3D G3DSA:1.10.150.390 - - - 1316 1377 3.7E-27

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.