Pseudomonas fulva 12-X, Psefu_0334

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003724 RNA helicase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00968
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0042255 ribosome assembly
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00968
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pfv03018 RNA degradation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR47959 ATP-DEPENDENT RNA HELICASE RHLE-RELATED - - 2 524 0.0
MobiDBLite mobidb-lite consensus disorder prediction - - 460 474 -
MobiDBLite mobidb-lite consensus disorder prediction - - 386 427 -
Pfam PF00270 DEAD/DEAH box helicase IPR011545 DEAD/DEAH box helicase domain 25 201 9.7E-46
SMART SM00490 helicmild6 IPR001650 Helicase, C-terminal 263 344 2.2E-32
FunFam G3DSA:3.40.50.300:FF:000108 ATP-dependent RNA helicase RhlE - - 1 215 7.6E-92
Hamap MF_00968 ATP-dependent RNA helicase RhlE [rhlE]. IPR028622 ATP-dependent RNA helicase RhlE 1 568 49.20557
MobiDBLite mobidb-lite consensus disorder prediction - - 554 586 -
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 24 105 8.76E-7
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 79 365 1.14E-71
CDD cd18787 SF2_C_DEAD - - 224 353 2.46652E-59
MobiDBLite mobidb-lite consensus disorder prediction - - 477 491 -
FunFam G3DSA:3.40.50.300:FF:000468 ATP-dependent RNA helicase RhlE - - 218 399 6.6E-94
MobiDBLite mobidb-lite consensus disorder prediction - - 386 615 -
Pfam PF00271 Helicase conserved C-terminal domain IPR001650 Helicase, C-terminal 239 344 3.6E-27
CDD cd00268 DEADc - - 12 213 3.20809E-102
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 1 215 2.3E-77
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 218 402 1.1E-50
SMART SM00487 ultradead3 IPR014001 Helicase superfamily 1/2, ATP-binding domain 20 227 3.7E-62

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.