Pseudomonas fulva 12-X, Psefu_1527

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0006281	DNA repair	ISM Inferred from Sequence Model Term mapped from: InterPro:PR00696	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0004520	endodeoxyribonuclease activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PR00696	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006310	DNA recombination	ISM Inferred from Sequence Model Term mapped from: InterPro:PR00696	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003676	nucleic acid binding	ISM Inferred from Sequence Model Term mapped from: InterPro:G3DSA:3.30.420.10	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	pfv03440	Homologous recombination	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
PRINTS	PR00696	Crossover junction endodeoxyribonuclease RUVC signature	IPR002176	Crossover junction endodeoxyribonuclease RuvC	107	126	9.8E-39
PRINTS	PR00696	Crossover junction endodeoxyribonuclease RUVC signature	IPR002176	Crossover junction endodeoxyribonuclease RuvC	61	77	9.8E-39
SUPERFAMILY	SSF53098	Ribonuclease H-like	IPR012337	Ribonuclease H-like superfamily	3	156	1.86E-51
PRINTS	PR00696	Crossover junction endodeoxyribonuclease RUVC signature	IPR002176	Crossover junction endodeoxyribonuclease RuvC	5	18	9.8E-39
PRINTS	PR00696	Crossover junction endodeoxyribonuclease RUVC signature	IPR002176	Crossover junction endodeoxyribonuclease RuvC	83	99	9.8E-39
PRINTS	PR00696	Crossover junction endodeoxyribonuclease RUVC signature	IPR002176	Crossover junction endodeoxyribonuclease RuvC	138	150	9.8E-39
Hamap	MF_00034	Crossover junction endodeoxyribonuclease RuvC [ruvC].	IPR002176	Crossover junction endodeoxyribonuclease RuvC	2	153	46.9748
PANTHER	PTHR30194	CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE RUVC	IPR002176	Crossover junction endodeoxyribonuclease RuvC	2	158	7.7E-60
Pfam	PF02075	Crossover junction endodeoxyribonuclease RuvC	IPR002176	Crossover junction endodeoxyribonuclease RuvC	4	150	1.2E-63
Gene3D	G3DSA:3.30.420.10	-	IPR036397	Ribonuclease H superfamily	2	158	9.6E-52
FunFam	G3DSA:3.30.420.10:FF:000002	Crossover junction endodeoxyribonuclease RuvC	-	-	2	158	2.2E-63
NCBIfam	TIGR00228	JCVI: crossover junction endodeoxyribonuclease RuvC	IPR002176	Crossover junction endodeoxyribonuclease RuvC	4	155	1.0E-60
CDD	cd16962	RuvC	IPR002176	Crossover junction endodeoxyribonuclease RuvC	4	153	3.56476E-77

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.