Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a4

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00204
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00204
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00204
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006265 DNA topological change
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00204
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005694 chromosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01898
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00418 DNA topoisomerase II family signature - - 408 422 2.5E-71
Gene3D G3DSA:3.40.50.670 - IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal 687 790 2.1E-28
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 362 382 1.1E-70
FunFam G3DSA:3.30.565.10:FF:000002 DNA gyrase subunit B - - 1 207 9.3E-91
PRINTS PR00418 DNA topoisomerase II family signature - - 102 116 2.5E-71
Pfam PF01751 Toprim domain IPR006171 TOPRIM domain 407 518 4.0E-17
PRINTS PR00418 DNA topoisomerase II family signature - - 724 740 2.5E-71
Pfam PF00986 DNA gyrase B subunit, carboxyl terminus IPR002288 DNA gyrase B subunit, C-terminal 720 781 5.6E-30
SMART SM00387 HKATPase_4 IPR003594 Histidine kinase/HSP90-like ATPase 20 164 4.4E-28
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 458 467 1.1E-70
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 169 184 1.1E-70
FunFam G3DSA:3.30.230.10:FF:000005 DNA gyrase subunit B - - 208 380 2.2E-78
PRINTS PR00418 DNA topoisomerase II family signature - - 24 39 2.5E-71
Gene3D G3DSA:3.30.565.10 - IPR036890 Histidine kinase/HSP90-like ATPase superfamily 1 208 1.1E-89
PRINTS PR00418 DNA topoisomerase II family signature - - 493 510 2.5E-71
Gene3D G3DSA:3.40.50.670 - IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal 385 567 4.1E-74
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 208 230 1.1E-70
NCBIfam TIGR01059 JCVI: DNA gyrase subunit B IPR011557 DNA gyrase, subunit B 2 791 0.0
PANTHER PTHR45866 DNA GYRASE/TOPOISOMERASE SUBUNIT B - - 1 791 0.0
CDD cd16928 HATPase_GyrB-like - - 25 204 3.91816E-106
Pfam PF00204 DNA gyrase B IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 209 378 8.3E-56
SUPERFAMILY SSF54211 Ribosomal protein S5 domain 2-like IPR020568 Ribosomal protein uS5 domain 2-type superfamily 209 380 1.9E-58
PRINTS PR00418 DNA topoisomerase II family signature - - 513 525 2.5E-71
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 745 757 1.1E-70
Pfam PF18053 DNA gyrase B subunit insert domain IPR041423 DNA gyrase subunit B insert domain 552 717 2.9E-53
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 300 316 1.1E-70
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 184 197 1.1E-70
Hamap MF_01898 DNA gyrase subunit B [gyrB]. IPR011557 DNA gyrase, subunit B 1 792 98.880379
CDD cd00822 TopoII_Trans_DNA_gyrase - - 208 365 4.31665E-73
FunFam G3DSA:3.40.50.670:FF:000005 DNA gyrase subunit B - - 379 579 9.6E-122
FunFam G3DSA:3.40.50.670:FF:000004 DNA gyrase subunit B - - 692 791 1.3E-48
CDD cd03366 TOPRIM_TopoIIA_GyrB IPR034160 DNA gyrase subunit B, TOPRIM domain 406 520 2.91273E-77
PRINTS PR00418 DNA topoisomerase II family signature - - 475 491 2.5E-71
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 348 362 1.1E-70
Gene3D G3DSA:3.30.230.10 - IPR014721 Small ribosomal subunit protein uS5 domain 2-type fold, subgroup 209 384 2.7E-66
SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase IPR036890 Histidine kinase/HSP90-like ATPase superfamily 2 206 8.12E-72
Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPR003594 Histidine kinase/HSP90-like ATPase 21 161 1.4E-21
PRINTS PR00418 DNA topoisomerase II family signature - - 256 269 2.5E-71
SUPERFAMILY SSF56719 Type II DNA topoisomerase IPR013760 DNA topoisomerase, type IIA-like domain superfamily 382 782 1.62E-87
SMART SM00433 topII5 IPR001241 DNA topoisomerase, type IIA 24 785 0.0
PRINTS PR00418 DNA topoisomerase II family signature - - 59 72 2.5E-71
Gene3D G3DSA:3.10.20.690 - - - 580 670 2.7E-25
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 761 777 1.1E-70

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.