Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a36

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01475
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01475
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pba02024 Quorum sensing 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:1.10.10.10:FF:000137 Zinc uptake transcriptional repressor - - 1 85 8.7E-38
FunFam G3DSA:3.30.1490.190:FF:000007 Fur family transcriptional regulator - - 86 144 3.6E-24
PANTHER PTHR33202 ZINC UPTAKE REGULATION PROTEIN IPR002481 Ferric-uptake regulator 4 142 1.0E-25
Pfam PF01475 Ferric uptake regulator family IPR002481 Ferric-uptake regulator 15 134 4.4E-11
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 1 85 2.2E-26
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 8 139 2.42E-30
Gene3D G3DSA:3.30.1490.190 - IPR043135 Ferric-uptake regulator, C-terminal domain 86 143 9.2E-14
CDD cd07153 Fur_like IPR002481 Ferric-uptake regulator 23 138 1.72132E-23

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.