Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a1132
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF18389 | TrmO C-terminal domain | IPR041369 | TrmO, C-terminal | 155 | 216 | 8.2E-17 |
| Gene3D | G3DSA:3.30.2310.10 | - | - | - | 137 | 224 | 1.0E-17 |
| SUPERFAMILY | SSF118196 | YaeB-like | IPR036413 | YaeB-like superfamily | 1 | 218 | 2.88E-74 |
| PANTHER | PTHR12818 | UNCHARACTERIZED | IPR040372 | YaeB-like | 3 | 228 | 9.2E-63 |
| NCBIfam | TIGR00104 | JCVI: tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO | IPR023370 | TrmO-like, N-terminal domain | 2 | 143 | 4.9E-47 |
| CDD | cd09281 | UPF0066 | IPR023370 | TrmO-like, N-terminal domain | 7 | 133 | 2.38659E-59 |
| Pfam | PF01980 | tRNA-methyltransferase O | IPR023370 | TrmO-like, N-terminal domain | 21 | 138 | 3.8E-46 |
| Gene3D | G3DSA:2.40.30.70 | - | IPR036414 | YaeB, N-terminal domain superfamily | 1 | 136 | 2.1E-46 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.