Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a2104

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005506 iron ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00606
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0020037 heme binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF46626
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0009055 electron transfer activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF46626
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pba01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pba02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pba01120 Microbial metabolism in diverse environments 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pba00920 Sulfur metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00606 Class ID cytochrome C signature IPR002324 Cytochrome c, class ID 92 102 6.8E-24
PRINTS PR00606 Class ID cytochrome C signature IPR002324 Cytochrome c, class ID 81 91 6.8E-24
PRINTS PR00606 Class ID cytochrome C signature IPR002324 Cytochrome c, class ID 66 79 6.8E-24
PRINTS PR00606 Class ID cytochrome C signature IPR002324 Cytochrome c, class ID 28 41 6.8E-24
SUPERFAMILY SSF46626 Cytochrome c IPR036909 Cytochrome c-like domain superfamily 24 103 2.06E-19
Pfam PF00034 Cytochrome c IPR009056 Cytochrome c-like domain 24 104 1.4E-8
Gene3D G3DSA:1.10.760.10 - IPR036909 Cytochrome c-like domain superfamily 23 104 7.4E-33
PRINTS PR00606 Class ID cytochrome C signature IPR002324 Cytochrome c, class ID 43 56 6.8E-24

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.