Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a2248
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0007165 | signal transduction |
Inferred from Sequence Model
Term mapped from: InterPro:PF00015
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Cellular Component | GO:0016020 | membrane |
Inferred from Sequence Model
Term mapped from: InterPro:PF00015
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | pba02030 | Bacterial chemotaxis | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | pba02020 | Two-component system | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF18575 | HAMP N-terminal domain 3 | IPR041395 | HAMP N-terminal domain 3 | 388 | 428 | 6.9E-21 |
| CDD | cd17528 | HAMP_III | - | - | 386 | 428 | 1.57396E-20 |
| Coils | Coil | Coil | - | - | 716 | 754 | - |
| CDD | cd17529 | HAMP_I | - | - | 206 | 249 | 1.13656E-12 |
| CDD | cd17527 | HAMP_II | - | - | 342 | 385 | 7.08296E-21 |
| Pfam | PF18575 | HAMP N-terminal domain 3 | IPR041395 | HAMP N-terminal domain 3 | 298 | 339 | 1.4E-16 |
| PANTHER | PTHR43531 | PROTEIN ICFG | - | - | 379 | 765 | 1.9E-122 |
| SMART | SM00304 | HAMP_11 | IPR003660 | HAMP domain | 337 | 390 | 13.0 |
| CDD | cd17528 | HAMP_III | - | - | 296 | 339 | 1.03564E-13 |
| Gene3D | G3DSA:1.10.287.950 | - | - | - | 552 | 762 | 7.9E-51 |
| FunFam | G3DSA:1.10.287.950:FF:000001 | Methyl-accepting chemotaxis sensory transducer | - | - | 473 | 760 | 1.0E-79 |
| Pfam | PF18947 | HAMP domain | IPR003660 | HAMP domain | 456 | 519 | 9.2E-21 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 775 | 796 | - |
| Gene3D | G3DSA:1.20.120.1530 | - | - | - | 194 | 337 | 4.0E-31 |
| Gene3D | G3DSA:1.20.120.1530 | - | - | - | 338 | 427 | 1.8E-32 |
| Coils | Coil | Coil | - | - | 332 | 352 | - |
| CDD | cd17527 | HAMP_II | - | - | 250 | 295 | 1.51277E-22 |
| SMART | SM00304 | HAMP_11 | IPR003660 | HAMP domain | 473 | 525 | 6.9E-4 |
| Pfam | PF00015 | Methyl-accepting chemotaxis protein (MCP) signalling domain | IPR004089 | Methyl-accepting chemotaxis protein (MCP) signalling domain | 586 | 727 | 5.7E-36 |
| SMART | SM00304 | HAMP_11 | IPR003660 | HAMP domain | 243 | 300 | 19.0 |
| Coils | Coil | Coil | - | - | 415 | 442 | - |
| SUPERFAMILY | SSF58104 | Methyl-accepting chemotaxis protein (MCP) signaling domain | - | - | 493 | 760 | 6.41E-65 |
| Gene3D | G3DSA:1.20.120.1530 | - | - | - | 428 | 521 | 4.5E-25 |
| CDD | cd11386 | MCP_signal | - | - | 555 | 738 | 8.52568E-50 |
| SMART | SM00283 | MA_2 | IPR004089 | Methyl-accepting chemotaxis protein (MCP) signalling domain | 526 | 759 | 1.2E-72 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.