Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a2644

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005507 copper ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR04244
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:2.130.10.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0050304 nitrous-oxide reductase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR04244
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005509 calcium ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR04244
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
MetaCyc nitrate reduction VII (denitrification) InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
MetaCyc nitrifier denitrification InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG pba01120 Microbial metabolism in diverse environments 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pba00910 Nitrogen metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:2.60.40.420:FF:000095 Nitrous-oxide reductase - - 519 638 3.8E-72
Pfam PF18793 Nitrous oxide reductase propeller repeat 2 IPR041142 Nitrous oxide reductase, propeller repeat 2 172 242 3.3E-31
Hamap MF_00716 Nitrous-oxide reductase [nosZ]. IPR023644 Nitrous-oxide reductase 2 638 60.695404
SUPERFAMILY SSF49503 Cupredoxins IPR008972 Cupredoxin 510 637 1.38E-35
SUPERFAMILY SSF50974 Nitrous oxide reductase, N-terminal domain IPR011045 Nitrous oxide reductase, N-terminal 62 507 0.0
Gene3D G3DSA:2.130.10.10 - IPR015943 WD40/YVTN repeat-like-containing domain superfamily 59 518 0.0
Pfam PF18764 Nitrous oxide reductase propeller repeat IPR041114 Nitrous oxide reductase, propeller repeat 1 425 495 2.1E-34
FunFam G3DSA:2.130.10.10:FF:001102 Nitrous-oxide reductase - - 59 518 0.0
Gene3D G3DSA:2.60.40.420 - IPR008972 Cupredoxin 519 637 4.3E-38
NCBIfam TIGR04244 JCVI: TAT-dependent nitrous-oxide reductase IPR023644 Nitrous-oxide reductase 18 637 0.0
CDD cd04223 N2OR_C IPR034205 Nitrous-oxide reductase, C-terminal 544 637 1.31837E-51
PANTHER PTHR42838 CYTOCHROME C OXIDASE SUBUNIT II - - 12 638 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.