Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a3072
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0022857 | transmembrane transporter activity |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01730
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0055085 | transmembrane transport |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01730
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Cellular Component | GO:0016020 | membrane |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01730
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| FunFam | G3DSA:2.40.30.170:FF:000011 | Efflux RND transporter periplasmic adaptor subunit | - | - | 203 | 277 | 2.9E-42 |
| SUPERFAMILY | SSF111369 | HlyD-like secretion proteins | - | - | 52 | 291 | 6.54E-70 |
| Coils | Coil | Coil | - | - | 148 | 168 | - |
| Gene3D | G3DSA:1.10.287.470 | Helix hairpin bin | - | - | 97 | 170 | 1.9E-66 |
| PANTHER | PTHR30158 | ACRA/E-RELATED COMPONENT OF DRUG EFFLUX TRANSPORTER | - | - | 7 | 378 | 2.5E-121 |
| Pfam | PF16576 | Barrel-sandwich domain of CusB or HlyD membrane-fusion | IPR032317 | RND efflux pump, membrane fusion protein, barrel-sandwich domain | 62 | 287 | 2.1E-16 |
| Gene3D | G3DSA:2.40.50.100 | - | - | - | 62 | 205 | 1.9E-66 |
| Gene3D | G3DSA:2.40.30.170 | - | - | - | 56 | 277 | 1.9E-66 |
| Gene3D | G3DSA:2.40.420.20 | - | - | - | 278 | 369 | 7.3E-17 |
| NCBIfam | TIGR01730 | JCVI: efflux RND transporter periplasmic adaptor subunit | IPR006143 | RND efflux pump, membrane fusion protein | 38 | 368 | 2.2E-78 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 391 | 417 | - |
| Coils | Coil | Coil | - | - | 103 | 123 | - |
| FunFam | G3DSA:2.40.420.20:FF:000001 | Efflux RND transporter periplasmic adaptor subunit | - | - | 278 | 369 | 1.0E-24 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.