Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a3097

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02735
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006303 double-strand break repair via nonhomologous end joining
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02735
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pba03450 Non-homologous end-joining 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF02735 Ku70/Ku80 beta-barrel domain IPR006164 Ku70/Ku80 beta-barrel domain 51 232 4.4E-34
NCBIfam TIGR02772 JCVI: Ku protein IPR009187 Non-homologous end joining protein Ku, prokaryotic type 41 301 9.0E-96
CDD cd00789 KU_like IPR009187 Non-homologous end joining protein Ku, prokaryotic type 42 303 8.47533E-121
MobiDBLite mobidb-lite consensus disorder prediction - - 299 335 -
Gene3D G3DSA:2.40.290.10 - IPR016194 SPOC-like, C-terminal domain superfamily 42 219 5.8E-19
Hamap MF_01875 Non-homologous end joining protein Ku [ku]. IPR009187 Non-homologous end joining protein Ku, prokaryotic type 41 300 30.70274
MobiDBLite mobidb-lite consensus disorder prediction - - 269 288 -
MobiDBLite mobidb-lite consensus disorder prediction - - 1 35 -
MobiDBLite mobidb-lite consensus disorder prediction - - 17 35 -
FunFam G3DSA:2.40.290.10:FF:000004 Non-homologous end joining protein Ku - - 43 216 2.6E-62
SUPERFAMILY SSF100939 SPOC domain-like IPR016194 SPOC-like, C-terminal domain superfamily 41 303 1.37E-53
PANTHER PTHR41251 NON-HOMOLOGOUS END JOINING PROTEIN KU IPR009187 Non-homologous end joining protein Ku, prokaryotic type 40 333 8.1E-98
PIRSF PIRSF006493 Prok_Ku IPR009187 Non-homologous end joining protein Ku, prokaryotic type 39 335 1.3E-96
SMART SM00559 ku_4 IPR006164 Ku70/Ku80 beta-barrel domain 92 220 2.5E-40

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.