Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a3226

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0015628 protein secretion by the type II secretion system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0015627 type II protein secretion system complex
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pba03070 Bacterial secretion system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:1.20.81.30:FF:000001 Type II secretion system protein F - - 256 372 1.5E-26
Gene3D G3DSA:1.20.81.30 Type II secretion system (T2SS), domain F IPR042094 Type II secretion system GspF domain superfamily 255 366 2.0E-25
NCBIfam TIGR02120 JCVI: type II secretion system inner membrane protein GspF IPR011850 Type II secretion system protein GspF 4 402 0.0
PRINTS PR00812 Bacterial general secretion pathway protein F signature IPR003004 GspF/PilC family 383 402 2.4E-28
Pfam PF00482 Type II secretion system (T2SS), protein F IPR018076 Type II secretion system protein GspF domain 272 394 3.0E-27
Coils Coil Coil - - 144 164 -
Pfam PF00482 Type II secretion system (T2SS), protein F IPR018076 Type II secretion system protein GspF domain 70 192 9.9E-31
PRINTS PR00812 Bacterial general secretion pathway protein F signature IPR003004 GspF/PilC family 65 77 2.4E-28
PANTHER PTHR30012 GENERAL SECRETION PATHWAY PROTEIN IPR003004 GspF/PilC family 1 402 1.8E-117
FunFam G3DSA:1.20.81.30:FF:000001 Type II secretion system protein F - - 55 171 1.2E-33
PRINTS PR00812 Bacterial general secretion pathway protein F signature IPR003004 GspF/PilC family 367 381 2.4E-28
Gene3D G3DSA:1.20.81.30 Type II secretion system (T2SS), domain F IPR042094 Type II secretion system GspF domain superfamily 56 170 1.2E-28
PRINTS PR00812 Bacterial general secretion pathway protein F signature IPR003004 GspF/PilC family 164 192 2.4E-28

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.