Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a3468
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0003677 | DNA binding |
Inferred from Sequence Model
Term mapped from: InterPro:PF00440
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
|
|
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Gene3D | G3DSA:1.10.357.10 | Tetracycline Repressor, domain 2 | - | - | 92 | 207 | 3.9E-8 |
| PANTHER | PTHR47506 | TRANSCRIPTIONAL REGULATORY PROTEIN | - | - | 24 | 206 | 6.9E-22 |
| SUPERFAMILY | SSF48498 | Tetracyclin repressor-like, C-terminal domain | IPR036271 | Tetracyclin repressor-like, C-terminal domain superfamily | 106 | 200 | 1.63E-9 |
| Pfam | PF00440 | Bacterial regulatory proteins, tetR family | IPR001647 | DNA-binding HTH domain, TetR-type | 36 | 80 | 5.6E-11 |
| SUPERFAMILY | SSF46689 | Homeodomain-like | IPR009057 | Homeobox-like domain superfamily | 22 | 87 | 9.98E-14 |
| Gene3D | G3DSA:1.10.10.60 | - | - | - | 20 | 87 | 7.9E-26 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.