Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a4258
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0015969 | guanosine tetraphosphate metabolic process |
Inferred from Sequence Model
Term mapped from: InterPro:cd05399
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | pba00230 | Purine metabolism | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF02824 | TGS domain | IPR004095 | TGS | 416 | 475 | 7.9E-22 |
| SUPERFAMILY | SSF81271 | TGS-like | IPR012676 | TGS-like | 407 | 476 | 6.76E-22 |
| CDD | cd04876 | ACT_RelA-SpoT | - | - | 672 | 743 | 2.68783E-20 |
| Pfam | PF13328 | HD domain | - | - | 40 | 202 | 6.3E-44 |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | IPR043519 | Nucleotidyltransferase superfamily | 219 | 352 | 4.4E-49 |
| PANTHER | PTHR21262 | GUANOSINE-3',5'-BIS DIPHOSPHATE 3'-PYROPHOSPHOHYDROLASE | - | - | 30 | 743 | 0.0 |
| Gene3D | G3DSA:1.10.3210.10 | Hypothetical protein af1432 | - | - | 11 | 218 | 1.3E-43 |
| SMART | SM00954 | RelA_SpoT_2 | IPR007685 | RelA/SpoT | 262 | 372 | 2.6E-67 |
| Gene3D | G3DSA:3.10.20.30 | - | IPR012675 | Beta-grasp domain superfamily | 409 | 483 | 1.2E-31 |
| FunFam | G3DSA:3.10.20.30:FF:000002 | GTP pyrophosphokinase (RelA/SpoT) | - | - | 409 | 482 | 7.4E-32 |
| CDD | cd05399 | NT_Rel-Spo_like | IPR007685 | RelA/SpoT | 246 | 360 | 3.01515E-38 |
| Pfam | PF13291 | ACT domain | IPR002912 | ACT domain | 667 | 743 | 8.1E-17 |
| SUPERFAMILY | SSF109604 | HD-domain/PDEase-like | - | - | 18 | 218 | 4.71E-47 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | IPR043519 | Nucleotidyltransferase superfamily | 207 | 420 | 7.19E-64 |
| Pfam | PF19296 | RelA/SpoT, AH and RIS domains | IPR045600 | RelA/SpoT, AH and RIS domains | 494 | 638 | 2.9E-8 |
| Pfam | PF04607 | Region found in RelA / SpoT proteins | IPR007685 | RelA/SpoT | 262 | 370 | 5.8E-38 |
| NCBIfam | TIGR00691 | JCVI: RelA/SpoT family protein | IPR004811 | RelA/SpoT family | 69 | 742 | 0.0 |
| SUPERFAMILY | SSF55021 | ACT-like | IPR045865 | ACT-like domain | 667 | 743 | 8.74E-14 |
| FunFam | G3DSA:3.30.460.10:FF:000001 | GTP pyrophosphokinase RelA | - | - | 219 | 352 | 4.5E-58 |
| Gene3D | G3DSA:3.30.70.260 | - | - | - | 666 | 746 | 3.7E-17 |
| CDD | cd01668 | TGS_RSH | IPR033655 | RelA/SpoT, TGS domain | 417 | 475 | 3.20996E-33 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.