Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a4612

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01387
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00448
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01387
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pba02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:3.40.50.2300:FF:000001 DNA-binding response regulator PhoB - - 1 79 1.6E-26
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 119 223 5.6E-28
NCBIfam TIGR01387 JCVI: heavy metal response regulator transcription factor IPR006291 Transcriptional regulatory protein CusR-like, heavy metal response 3 219 4.3E-94
FunFam G3DSA:1.10.10.10:FF:000005 Two-component system response regulator - - 121 222 7.5E-34
Gene3D G3DSA:3.40.50.2300 - - - 1 79 7.6E-21
CDD cd00383 trans_reg_C IPR001867 OmpR/PhoB-type DNA-binding domain 133 219 4.57155E-31
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 1 177 5.43E-40
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 1 111 1.0E-40
SMART SM00862 Trans_reg_C_3 IPR001867 OmpR/PhoB-type DNA-binding domain 144 219 1.4E-23
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 3 111 1.6E-24
Pfam PF00486 Transcriptional regulatory protein, C terminal IPR001867 OmpR/PhoB-type DNA-binding domain 144 219 1.0E-23
PANTHER PTHR48111 REGULATOR OF RPOS IPR039420 Transcriptional regulatory protein WalR-like 1 223 8.1E-56
Gene3D G3DSA:6.10.250.690 - - - 80 117 1.6E-13
CDD cd19935 REC_OmpR_CusR-like - - 3 101 2.92913E-54

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.