Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a5167
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0018189 | pyrroloquinoline quinone biosynthetic process |
Inferred from Sequence Model
Term mapped from: InterPro:MF_00654
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| MetaCyc | pyrroloquinoline quinone biosynthesis | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| CDD | cd19370 | TenA_PqqC | - | - | 11 | 224 | 2.94591E-89 |
| NCBIfam | TIGR02111 | JCVI: pyrroloquinoline-quinone synthase PqqC | IPR011845 | Coenzyme PQQ biosynthesis protein C | 6 | 240 | 5.4E-126 |
| Gene3D | G3DSA:1.20.910.10 | - | IPR016084 | Haem oxygenase-like, multi-helical | 3 | 249 | 4.3E-90 |
| SUPERFAMILY | SSF48613 | Heme oxygenase-like | IPR016084 | Haem oxygenase-like, multi-helical | 1 | 248 | 5.78E-81 |
| PANTHER | PTHR40279 | PQQC-LIKE PROTEIN | IPR039068 | Pyrroloquinoline-quinone synthase-like | 6 | 232 | 5.0E-69 |
| Hamap | MF_00654 | Pyrroloquinoline-quinone synthase [pqqC]. | IPR011845 | Coenzyme PQQ biosynthesis protein C | 1 | 250 | 140.963959 |
| Pfam | PF03070 | TENA/THI-4/PQQC family | IPR004305 | Thiaminase-2/PQQC | 14 | 222 | 1.0E-63 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.