Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a5619

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0050660 flavin adenine dinucleotide binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55424
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004148 dihydrolipoyl dehydrogenase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01350
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016491 oxidoreductase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55424
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pba00630 Glyoxylate and dicarboxylate metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pba00020 Citrate cycle (TCA cycle) 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pba00260 Glycine, serine and threonine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pba01200 Carbon metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pba00640 Propanoate metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pba00620 Pyruvate metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pba00010 Glycolysis / Gluconeogenesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pba00280 Valine, leucine and isoleucine degradation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pba01110 Biosynthesis of secondary metabolites 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pba01130 Biosynthesis of antibiotics 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc 2-oxoglutarate decarboxylation to succinyl-CoA InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG pba01120 Microbial metabolism in diverse environments 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc 2-oxoisovalerate decarboxylation to isobutanoyl-CoA InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG pba01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.50.50.60 - IPR036188 FAD/NAD(P)-binding domain superfamily 149 272 1.4E-121
PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature - - 137 155 7.4E-37
FunFam G3DSA:3.30.390.30:FF:000001 Dihydrolipoyl dehydrogenase - - 346 466 3.9E-46
Gene3D G3DSA:3.50.50.60 - IPR036188 FAD/NAD(P)-binding domain superfamily 5 329 1.4E-121
NCBIfam TIGR01350 JCVI: dihydrolipoyl dehydrogenase IPR006258 Dihydrolipoamide dehydrogenase 3 465 0.0
PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature - - 408 423 7.6E-79
PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature - - 5 27 7.6E-79
PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature - - 343 364 7.6E-79
PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature - - 308 315 7.6E-79
SUPERFAMILY SSF51905 FAD/NAD(P)-binding domain IPR036188 FAD/NAD(P)-binding domain superfamily 2 368 5.28E-63
PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature - - 6 25 7.4E-37
PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature - - 38 53 7.6E-79
PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature - - 176 201 7.6E-79
SUPERFAMILY SSF55424 FAD/NAD-linked reductases, dimerisation (C-terminal) domain IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily 343 464 5.15E-42
PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature - - 266 280 7.6E-79
PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature - - 265 281 7.4E-37
PIRSF PIRSF000350 Hg-II_reductase_MerA IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I 1 464 7.2E-88
PANTHER PTHR22912 DISULFIDE OXIDOREDUCTASE - - 3 458 0.0
PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature - - 176 194 7.4E-37
PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature - - 293 315 7.4E-37
PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature - - 140 149 7.6E-79
Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 347 455 5.5E-40
PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature - - 430 450 7.6E-79
FunFam G3DSA:3.50.50.60:FF:000025 Dihydrolipoyl dehydrogenase - - 149 272 1.5E-46
Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase IPR023753 FAD/NAD(P)-binding domain 4 328 1.8E-70
Gene3D G3DSA:3.30.390.30 - IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily 346 466 1.6E-48

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.