Pseudomonas sp. UW4, PputUW4_00398 (rfaC)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0009244 lipopolysaccharide core region biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02193
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016757 transferase activity, transferring glycosyl groups
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd03789
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008920 lipopolysaccharide heptosyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02193
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppuu01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppuu00540 Lipopolysaccharide biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR30160 TETRAACYLDISACCHARIDE 4'-KINASE-RELATED - - 1 347 1.9E-63
SUPERFAMILY SSF53756 UDP-Glycosyltransferase/glycogen phosphorylase - - 1 347 1.57E-79
FunFam G3DSA:3.40.50.2000:FF:000106 Lipopolysaccharide heptosyltransferase 1 - - 166 316 7.2E-65
Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) IPR002201 Glycosyl transferase, family 9 76 313 2.3E-72
Gene3D G3DSA:3.40.50.2000 Glycogen Phosphorylase B; - - 165 351 4.7E-40
NCBIfam TIGR02193 JCVI: lipopolysaccharide heptosyltransferase I IPR011908 Lipopolysaccharide heptosyltransferase I 2 297 6.0E-112
CDD cd03789 GT9_LPS_heptosyltransferase IPR002201 Glycosyl transferase, family 9 2 343 6.61006E-61
Gene3D G3DSA:3.40.50.2000 Glycogen Phosphorylase B; - - 1 162 7.2E-44

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.