Pseudomonas sp. UW4, PputUW4_01164

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016021 integral component of membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR01021
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005509 calcium ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF103647
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0009279 cell outer membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR01021
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
ProSiteProfiles PS51123 OmpA-like domain profile. IPR006665 OmpA-like domain 112 229 49.59
SUPERFAMILY SSF103647 IPR028974 TSP type-3 repeat 69 101 6.93E-9
Pfam PF00691 OmpA family IPR006665 OmpA-like domain 125 221 5.7E-26
MobiDBLite mobidb-lite consensus disorder prediction 215 229 -
Gene3D G3DSA:3.30.1330.60 IPR036737 OmpA-like domain superfamily 105 229 1.2E-41
CDD cd07185 OmpA_C-like IPR006665 OmpA-like domain 120 227 1.64395E-49
PRINTS PR01021 OMPA domain signature IPR006664 Outer membrane protein, bacterial 125 147 2.7E-19
PRINTS PR01021 OMPA domain signature IPR006664 Outer membrane protein, bacterial 156 171 2.7E-19
SUPERFAMILY SSF103088 IPR036737 OmpA-like domain superfamily 102 227 1.57E-36
PRINTS PR01021 OMPA domain signature IPR006664 Outer membrane protein, bacterial 171 187 2.7E-19
MobiDBLite mobidb-lite consensus disorder prediction 207 229 -
ProSiteProfiles PS51257 Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 5.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.