Pseudomonas sp. UW4, PputUW4_03257 (benA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0044237 cellular metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00090
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0051537 2 iron, 2 sulfur cluster binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF50022
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005506 iron ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00848
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppuu01220 Degradation of aromatic compounds 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppuu01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppuu00364 Fluorobenzoate degradation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppuu00362 Benzoate degradation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppuu01120 Microbial metabolism in diverse environments 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppuu00622 Xylene degradation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR03229 JCVI: benzoate 1,2-dioxygenase large subunit IPR017639 Benzoate 1,2-dioxygenase, large subunit 8 439 0.0
PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit 30 55 2.2E-45
Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain 196 371 3.7E-15
SUPERFAMILY SSF50022 ISP domain IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily 8 163 1.44E-44
SUPERFAMILY SSF55961 Bet v1-like - - 164 444 5.49E-68
Gene3D G3DSA:3.90.380.10 - - - 165 439 9.1E-68
PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit 81 101 2.2E-45
CDD cd03542 Rieske_RO_Alpha_HBDO - - 46 168 6.29645E-90
PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit 189 211 2.2E-45
PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit 60 75 2.2E-45
Gene3D G3DSA:2.102.10.10 - IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily 44 164 8.3E-33
PANTHER PTHR43756 CHOLINE MONOOXYGENASE, CHLOROPLASTIC IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit 9 437 3.7E-67
PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit 102 122 2.2E-45
PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit 148 174 2.2E-45
Pfam PF00355 Rieske [2Fe-2S] domain IPR017941 Rieske [2Fe-2S] iron-sulphur domain 45 129 9.9E-21
CDD cd08879 RHO_alpha_C_AntDO-like - - 194 437 3.07344E-87

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.