Pseudomonas sp. UW4, PputUW4_04890 (rpoC)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00623	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006351	transcription, DNA-templated	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00623	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003677	DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00623	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	ppuu00230	Purine metabolism	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	ppuu03020	RNA polymerase	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	ppuu01100	Metabolic pathways	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	ppuu00240	Pyrimidine metabolism	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Pfam	PF00623	RNA polymerase Rpb1, domain 2	IPR000722	RNA polymerase, alpha subunit	344	385	1.4E-7
Gene3D	G3DSA:2.40.50.100	-	-	-	948	1022	4.3E-26
CDD	cd01609	RNAP_beta'_N	-	-	15	813	0.0
PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	IPR045867	DNA-directed RNA polymerase, subunit beta-prime	23	1363	0.0
Pfam	PF04983	RNA polymerase Rpb1, domain 3	IPR007066	RNA polymerase Rpb1, domain 3	489	643	3.3E-29
Gene3D	G3DSA:2.40.50.100	-	-	-	1151	1215	6.7E-65
Pfam	PF04997	RNA polymerase Rpb1, domain 1	IPR007080	RNA polymerase Rpb1, domain 1	16	342	3.9E-88
NCBIfam	TIGR02386	JCVI: DNA-directed RNA polymerase subunit beta'	IPR012754	DNA-directed RNA polymerase, subunit beta-prime, bacterial type	19	1366	0.0
Gene3D	G3DSA:1.10.132.30	-	IPR038120	RNA polymerase Rpb1, funnel domain superfamily	641	790	2.7E-67
Gene3D	G3DSA:1.10.1790.20	-	-	-	1135	1314	6.7E-65
Gene3D	G3DSA:1.10.40.90	-	-	-	370	413	4.4E-21
Pfam	PF05000	RNA polymerase Rpb1, domain 4	IPR007083	RNA polymerase Rpb1, domain 4	674	763	6.1E-20
CDD	cd02655	RNAP_beta'_C	-	-	909	1363	1.1327E-78
Pfam	PF00623	RNA polymerase Rpb1, domain 2	IPR000722	RNA polymerase, alpha subunit	389	485	4.1E-28
Gene3D	G3DSA:1.10.150.390	-	-	-	1316	1377	4.1E-27
Gene3D	G3DSA:2.40.40.20	-	-	-	332	486	5.6E-48
SMART	SM00663	rpolaneu7	IPR006592	RNA polymerase, N-terminal	235	514	0.0
Pfam	PF04998	RNA polymerase Rpb1, domain 5	IPR007081	RNA polymerase Rpb1, domain 5	766	1316	8.6E-79
FunFam	G3DSA:1.10.132.30:FF:000003	DNA-directed RNA polymerase subunit beta	-	-	638	790	2.6E-75
Hamap	MF_01322	DNA-directed RNA polymerase subunit beta' [rpoC].	IPR012754	DNA-directed RNA polymerase, subunit beta-prime, bacterial type	14	1377	18.912317
FunFam	G3DSA:1.10.40.90:FF:000001	DNA-directed RNA polymerase subunit beta	-	-	372	413	2.1E-22
Gene3D	G3DSA:1.10.274.100	RNA polymerase Rpb1, domain 3	IPR042102	RNA polymerase Rpb1, domain 3 superfamily	489	564	4.9E-22
Gene3D	G3DSA:4.10.860.120	RNA polymerase II, clamp domain	IPR044893	RNA polymerase Rpb1, clamp domain superfamily	8	145	1.9E-23
Gene3D	G3DSA:2.40.50.100	-	-	-	1023	1126	5.0E-32
Gene3D	G3DSA:1.10.274.100	RNA polymerase Rpb1, domain 3	IPR042102	RNA polymerase Rpb1, domain 3 superfamily	565	640	4.2E-19
Coils	Coil	Coil	-	-	191	211	-
FunFam	G3DSA:4.10.860.120:FF:000001	DNA-directed RNA polymerase subunit beta	-	-	12	132	3.7E-68
FunFam	G3DSA:1.10.150.390:FF:000002	DNA-directed RNA polymerase subunit beta''	-	-	1316	1377	2.2E-32
SUPERFAMILY	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	-	-	15	1363	0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.