Pseudomonas sp. UW4, PputUW4_05389

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00086 pac_2 IPR001610 PAC motif 474 516 0.0015
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 702 955 2.4E-101
CDD cd00130 PAS IPR000014 PAS domain 289 391 5.75164E-8
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 526 686 1.8E-29
CDD cd00130 PAS IPR000014 PAS domain 411 513 2.01011E-8
SMART SM00267 duf1_3 IPR000160 GGDEF domain 516 689 2.1E-52
Pfam PF08447 PAS fold IPR013655 PAS fold-3 304 387 6.0E-20
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 700 955 2.3E-92
Coils Coil Coil - - 219 260 -
Gene3D G3DSA:3.30.450.20 PAS domain - - 400 525 7.9E-30
SMART SM00091 pas_2 IPR000014 PAS domain 402 468 1.2E-5
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 532 691 1.96E-41
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 286 395 2.62E-16
Pfam PF00563 EAL domain IPR001633 EAL domain 705 940 7.9E-72
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 527 684 6.9E-41
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 526 701 3.2E-49
Gene3D G3DSA:3.30.450.20 PAS domain - - 269 390 5.1E-34
Pfam PF13426 PAS domain IPR000014 PAS domain 413 514 5.5E-13
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 704 952 2.22E-89
SMART SM00052 duf2_2 IPR001633 EAL domain 699 945 9.0E-120
CDD cd01948 EAL IPR001633 EAL domain 705 944 2.95492E-109
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 407 514 4.71E-24
SMART SM00091 pas_2 IPR000014 PAS domain 277 344 16.0
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 399 522 6.6E-18
CDD cd01949 GGDEF IPR000160 GGDEF domain 528 687 8.00227E-50
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 379 954 0.0
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 303 400 2.0E-8
SMART SM00086 pac_2 IPR001610 PAC motif 351 394 3.2E-8

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.