Pseudomonas protegens Pf-5, PFL_0062 (ctaD)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Cellular Component	GO:0016020	membrane	ISM Inferred from Sequence Model Term mapped from: InterPro:PR01165	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0015990	electron transport coupled proton transport	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR02891	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0020037	heme binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PR01165	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0009060	aerobic respiration	ISM Inferred from Sequence Model Term mapped from: InterPro:PR01165	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0004129	cytochrome-c oxidase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PR01165	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Cellular Component	GO:0045277	respiratory chain complex IV	ISM Inferred from Sequence Model Term mapped from: InterPro:cd01663	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	pfl00190	Oxidative phosphorylation	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pfl01100	Metabolic pathways	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
CDD	cd01663	Cyt_c_Oxidase_I	IPR033944	Cytochrome c oxidase subunit I domain	31	515	0.0
Gene3D	G3DSA:1.20.210.10	-	IPR036927	Cytochrome c oxidase-like, subunit I superfamily	13	531	0.0
PRINTS	PR01165	Cytochrome c oxidase subunit I signature	IPR000883	Cytochrome c oxidase subunit I	26	51	7.5E-120
FunFam	G3DSA:1.20.210.10:FF:000004	Cytochrome c oxidase subunit 1	-	-	15	531	0.0
SUPERFAMILY	SSF81442	Cytochrome c oxidase subunit I-like	IPR036927	Cytochrome c oxidase-like, subunit I superfamily	24	530	0.0
PANTHER	PTHR10422	CYTOCHROME C OXIDASE SUBUNIT 1	IPR000883	Cytochrome c oxidase subunit I	24	531	0.0
PRINTS	PR01165	Cytochrome c oxidase subunit I signature	IPR000883	Cytochrome c oxidase subunit I	358	376	7.5E-120
NCBIfam	TIGR02891	JCVI: cytochrome c oxidase subunit I	IPR014241	Cytochrome c oxidase, subunit I bacterial type	27	530	0.0
PRINTS	PR01165	Cytochrome c oxidase subunit I signature	IPR000883	Cytochrome c oxidase subunit I	143	155	7.5E-120
PRINTS	PR01165	Cytochrome c oxidase subunit I signature	IPR000883	Cytochrome c oxidase subunit I	173	191	7.5E-120
PRINTS	PR01165	Cytochrome c oxidase subunit I signature	IPR000883	Cytochrome c oxidase subunit I	202	221	7.5E-120
PRINTS	PR01165	Cytochrome c oxidase subunit I signature	IPR000883	Cytochrome c oxidase subunit I	436	457	7.5E-120
PRINTS	PR01165	Cytochrome c oxidase subunit I signature	IPR000883	Cytochrome c oxidase subunit I	299	314	7.5E-120
PRINTS	PR01165	Cytochrome c oxidase subunit I signature	IPR000883	Cytochrome c oxidase subunit I	323	344	7.5E-120
PRINTS	PR01165	Cytochrome c oxidase subunit I signature	IPR000883	Cytochrome c oxidase subunit I	100	124	7.5E-120
PRINTS	PR01165	Cytochrome c oxidase subunit I signature	IPR000883	Cytochrome c oxidase subunit I	386	405	7.5E-120
Pfam	PF00115	Cytochrome C and Quinol oxidase polypeptide I	IPR000883	Cytochrome c oxidase subunit I	35	477	0.0
PRINTS	PR01165	Cytochrome c oxidase subunit I signature	IPR000883	Cytochrome c oxidase subunit I	73	96	7.5E-120
PRINTS	PR01165	Cytochrome c oxidase subunit I signature	IPR000883	Cytochrome c oxidase subunit I	253	274	7.5E-120

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.