Pseudomonas protegens Pf-5, PFL_0732

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 103 304 1.25E-25
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 17 76 6.4E-15
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 16 100 1.15E-17
Gene3D G3DSA:3.40.190.290 - - - 114 305 2.0E-15
PANTHER PTHR30126 HTH-TYPE TRANSCRIPTIONAL REGULATOR - - 14 304 6.1E-46
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 101 303 3.6E-26
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 14 100 4.8E-20
FunFam G3DSA:1.10.10.10:FF:000511 LysR family transcriptional regulator - - 15 102 3.2E-39
CDD cd05466 PBP2_LTTR_substrate - - 106 302 4.79622E-15

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.