Pseudomonas protegens Pf-5, PFL_1753

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00486
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00486
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00486
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 28 136 1.7E-25
CDD cd00383 trans_reg_C IPR001867 OmpR/PhoB-type DNA-binding domain 158 248 3.78159E-27
Gene3D G3DSA:3.40.50.2300 - - - 23 103 9.8E-19
FunFam G3DSA:1.10.10.10:FF:000099 Two-component system response regulator TorR - - 140 251 2.3E-42
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 25 135 2.3E-38
SUPERFAMILY SSF46894 C-terminal effector domain of the bipartite response regulators IPR016032 Signal transduction response regulator, C-terminal effector 148 249 1.28E-25
SMART SM00862 Trans_reg_C_3 IPR001867 OmpR/PhoB-type DNA-binding domain 172 248 7.2E-25
FunFam G3DSA:3.40.50.2300:FF:000001 DNA-binding response regulator PhoB - - 24 103 1.9E-23
Pfam PF00486 Transcriptional regulatory protein, C terminal IPR001867 OmpR/PhoB-type DNA-binding domain 175 248 2.1E-23
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 141 252 1.6E-30
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 24 150 1.11E-39
Gene3D G3DSA:6.10.250.690 - - - 104 140 7.7E-17
PANTHER PTHR48111 REGULATOR OF RPOS IPR039420 Transcriptional regulatory protein WalR-like 27 250 3.1E-48

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.