Pseudomonas protegens Pf-5, PFL_2830

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0047661 amino-acid racemase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00035
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.40.50.1860
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0036361 racemase activity, acting on amino acids and derivatives
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01177
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006807 nitrogen compound metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01177
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pfl01054 Nonribosomal peptide structures 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pfl00250 Alanine, aspartate and glutamate metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing) InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
MetaCyc UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF53681 Aspartate/glutamate racemase IPR001920 Asp/Glu racemase 1 116 5.89E-36
SUPERFAMILY SSF53681 Aspartate/glutamate racemase IPR001920 Asp/Glu racemase 120 228 1.62E-32
Gene3D G3DSA:3.40.50.1860 - IPR001920 Asp/Glu racemase 4 224 1.9E-86
Gene3D G3DSA:3.40.50.1860 - IPR001920 Asp/Glu racemase 104 214 1.9E-86
PANTHER PTHR21198 GLUTAMATE RACEMASE - - 2 227 1.9E-37
NCBIfam TIGR00035 JCVI: amino acid racemase IPR004380 Aspartate racemase 1 228 1.2E-65
Pfam PF01177 Asp/Glu/Hydantoin racemase IPR015942 Asp/Glu/hydantoin racemase 7 223 1.0E-40

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.