Pseudomonas protegens Pf-5, PFL_3267

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0016853	isomerase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PTHR43149	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	pfl00310	Lysine degradation	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pfl01120	Microbial metabolism in diverse environments	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pfl00930	Caprolactam degradation	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pfl01212	Fatty acid metabolism	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pfl00281	Geraniol degradation	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pfl00362	Benzoate degradation	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pfl01130	Biosynthesis of antibiotics	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pfl00903	Limonene and pinene degradation	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pfl00380	Tryptophan metabolism	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pfl00280	Valine, leucine and isoleucine degradation	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pfl00410	beta-Alanine metabolism	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pfl01110	Biosynthesis of secondary metabolites	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pfl01100	Metabolic pathways	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pfl00071	Fatty acid degradation	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pfl00627	Aminobenzoate degradation	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pfl00360	Phenylalanine metabolism	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pfl00640	Propanoate metabolism	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pfl00650	Butanoate metabolism	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
PANTHER	PTHR43149	ENOYL-COA HYDRATASE	IPR045002	Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase Ech1-like	3	268	8.3E-107
FunFam	G3DSA:3.90.226.10:FF:000024	Delta3,5-delta2,4-dienoyl-CoA isomerase	-	-	1	211	1.8E-85
Pfam	PF00378	Enoyl-CoA hydratase/isomerase	IPR001753	Enoyl-CoA hydratase/isomerase	12	268	1.8E-47
FunFam	G3DSA:1.10.12.10:FF:000004	Delta3,5-delta2,4-dienoyl-CoA isomerase	-	-	212	270	1.2E-27
SUPERFAMILY	SSF52096	ClpP/crotonase	IPR029045	ClpP/crotonase-like domain superfamily	2	268	7.39E-78
CDD	cd06558	crotonase-like	-	-	7	210	1.67931E-65
Gene3D	G3DSA:1.10.12.10	-	IPR014748	Enoyl-CoA hydratase, C-terminal	213	267	2.3E-25
Gene3D	G3DSA:3.90.226.10	-	-	-	1	212	1.2E-63

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.