Pseudomonas protegens Pf-5, PFL_4954 (ispG)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005506 iron ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF004640
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0044237 cellular metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.20.20.20
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04551
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0016114 terpenoid biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04551
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0008299 isoprenoid biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF004640
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pfl01110 Biosynthesis of secondary metabolites 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pfl00900 Terpenoid backbone biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pfl01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pfl01130 Biosynthesis of antibiotics 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type 7 359 35.32074
PIRSF PIRSF004640 IspG IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial 1 362 0.0
PANTHER PTHR30454 4-HYDROXY-3-METHYLBUT-2-EN-1-YL DIPHOSPHATE SYNTHASE IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type 7 253 0.0
Gene3D G3DSA:3.30.413.10 Sulfite Reductase Hemoprotein, domain 1 IPR045854 Nitrite and sulphite reductase 4Fe-4S domain-like superfamily 262 361 6.9E-27
SUPERFAMILY SSF56014 Nitrite and sulphite reductase 4Fe-4S domain-like IPR045854 Nitrite and sulphite reductase 4Fe-4S domain-like superfamily 265 352 2.49E-12
Gene3D G3DSA:3.20.20.20 - IPR011005 Dihydropteroate synthase-like 1 261 7.5E-108
Pfam PF04551 GcpE protein IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type 13 352 0.0
FunFam G3DSA:3.20.20.20:FF:000001 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) - - 1 261 1.0E-130
SUPERFAMILY SSF51412 Inosine monophosphate dehydrogenase (IMPDH) - - 24 132 3.3E-10
NCBIfam TIGR00612 JCVI: (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type 9 351 2.1E-130
Coils Coil Coil - - 340 364 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.