Pseudomonas protegens Pf-5, PFL_5389

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006935 chemotaxis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004888 transmembrane signaling receptor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00015
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00015
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00283 MA_2 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 278 539 4.3E-77
Pfam PF12729 Four helix bundle sensory module for signal transduction IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain 5 184 3.8E-16
Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 322 505 7.0E-44
PANTHER PTHR32089 METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPB - - 15 539 3.7E-110
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 405 434 9.2E-24
CDD cd06225 HAMP - - 216 258 3.18255E-5
SMART SM00304 HAMP_11 IPR003660 HAMP domain 266 316 27.0
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 299 328 9.2E-24
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 376 403 9.2E-24
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 6 31 9.2E-24
CDD cd11386 MCP_signal - - 305 504 3.35718E-51
Gene3D G3DSA:6.10.340.10 - - - 171 269 8.7E-17
SMART SM00304 HAMP_11 IPR003660 HAMP domain 211 263 1.7E-10
Coils Coil Coil - - 290 317 -
SUPERFAMILY SSF58104 Methyl-accepting chemotaxis protein (MCP) signaling domain - - 231 540 1.23E-73
Gene3D G3DSA:1.10.287.950 - - - 289 540 2.8E-57
Pfam PF00672 HAMP domain IPR003660 HAMP domain 208 260 6.7E-10
FunFam G3DSA:1.10.287.950:FF:000001 Methyl-accepting chemotaxis sensory transducer - - 211 540 2.7E-95

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.