Pseudomonas protegens Pf-5, PFL_5664

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.40.190.10 - - - 122 216 8.7E-73
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 983 1233 3.14E-89
SMART SM00086 pac_2 IPR001610 PAC motif 385 425 0.1
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 686 803 3.6E-18
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 558 681 7.2E-13
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 435 556 3.0E-12
CDD cd01007 PBP2_BvgS_HisK_like - - 35 254 3.20206E-85
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 666 1225 0.0
Pfam PF08447 PAS fold IPR013655 PAS fold-3 336 412 2.9E-9
Pfam PF13426 PAS domain IPR000014 PAS domain 571 673 1.1E-5
Gene3D G3DSA:3.30.450.20 PAS domain - - 547 672 2.7E-19
CDD cd00130 PAS IPR000014 PAS domain 691 793 3.6645E-10
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 546 672 2.26E-19
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 38 256 2.24E-51
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 307 432 1.5E-11
SMART SM00091 pas_2 IPR000014 PAS domain 311 379 0.0017
SMART SM00086 pac_2 IPR001610 PAC motif 754 796 1.8E-8
SMART SM00052 duf2_2 IPR001633 EAL domain 978 1224 2.8E-109
SMART SM00091 pas_2 IPR000014 PAS domain 682 751 1.2E-6
Gene3D G3DSA:3.40.190.10 - - - 27 253 8.7E-73
CDD cd00130 PAS IPR000014 PAS domain 331 422 2.48643E-5
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 687 794 2.09E-26
SMART SM00062 AABind_6 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF 37 257 6.6E-35
Pfam PF13426 PAS domain IPR000014 PAS domain 693 794 7.0E-13
SMART SM00267 duf1_3 IPR000160 GGDEF domain 796 968 1.1E-67
Gene3D G3DSA:3.30.450.20 PAS domain - - 427 546 1.7E-20
CDD cd01949 GGDEF IPR000160 GGDEF domain 808 965 2.85852E-64
Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF 38 255 4.0E-41
SMART SM00086 pac_2 IPR001610 PAC motif 509 549 0.12
CDD cd01948 EAL IPR001633 EAL domain 984 1224 6.39901E-110
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 979 1233 9.0E-94
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 422 547 4.71E-19
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 807 964 8.8E-51
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 803 966 1.2E-41
SMART SM00091 pas_2 IPR000014 PAS domain 561 628 0.022
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 978 1239 4.6E-101
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 812 969 8.63E-50
SMART SM00091 pas_2 IPR000014 PAS domain 437 504 4.1E-4
Gene3D G3DSA:3.30.450.20 PAS domain - - 678 807 2.3E-35
Pfam PF00563 EAL domain IPR001633 EAL domain 985 1219 1.4E-74
Gene3D G3DSA:3.30.450.20 PAS domain - - 320 426 5.6E-20
SMART SM00086 pac_2 IPR001610 PAC motif 634 674 0.0035
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 802 969 1.6E-41
CDD cd00130 PAS IPR000014 PAS domain 570 671 3.29696E-5
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 296 423 5.15E-17
Pfam PF13426 PAS domain IPR000014 PAS domain 450 548 1.8E-5
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 808 976 4.3E-59
CDD cd00130 PAS IPR000014 PAS domain 448 546 2.93941E-7

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.