Pseudomonas protegens Pf-5, PFL_5772 (dbpA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 2 211 9.0E-73
SMART SM00487 ultradead3 IPR014001 Helicase superfamily 1/2, ATP-binding domain 25 222 2.0E-58
Coils Coil Coil - - 83 103 -
FunFam G3DSA:3.30.70.330:FF:000254 ATP-dependent RNA helicase DbpA - - 389 461 4.1E-34
Pfam PF00271 Helicase conserved C-terminal domain IPR001650 Helicase, C-terminal 235 339 2.5E-23
CDD cd00268 DEADc - - 17 209 2.05766E-94
Pfam PF00270 DEAD/DEAH box helicase IPR011545 DEAD/DEAH box helicase domain 30 195 2.7E-45
SMART SM00490 helicmild6 IPR001650 Helicase, C-terminal 258 339 1.2E-25
Gene3D G3DSA:3.30.70.330 - IPR012677 Nucleotide-binding alpha-beta plait domain superfamily 389 460 9.4E-23
CDD cd18787 SF2_C_DEAD - - 219 348 6.16098E-48
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 213 378 3.8E-42
Pfam PF03880 DbpA RNA binding domain IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain 389 459 2.6E-25
PANTHER PTHR47959 ATP-DEPENDENT RNA HELICASE RHLE-RELATED - - 7 382 7.7E-113
CDD cd12501 RRM_EcDbpA_like - - 389 461 1.72401E-37
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 74 361 7.78E-69

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.