Pseudomonas protegens Pf-5, PFL_5801 (rhlE_2)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0003724	RNA helicase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_00968	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0042255	ribosome assembly	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_00968	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0005524	ATP binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00270	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003676	nucleic acid binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00270	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	pfl03018	RNA degradation	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	420	478	-
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	522	540	-
PANTHER	PTHR47959	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	-	-	2	596	0.0
FunFam	G3DSA:3.40.50.300:FF:000108	ATP-dependent RNA helicase RhlE	-	-	1	215	7.0E-91
CDD	cd18787	SF2_C_DEAD	-	-	224	353	4.93874E-60
Pfam	PF00271	Helicase conserved C-terminal domain	IPR001650	Helicase, C-terminal	239	344	1.6E-26
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	551	571	-
Gene3D	G3DSA:3.40.50.300	-	IPR027417	P-loop containing nucleoside triphosphate hydrolase	1	215	2.1E-76
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	IPR027417	P-loop containing nucleoside triphosphate hydrolase	79	365	1.78E-71
Pfam	PF00270	DEAD/DEAH box helicase	IPR011545	DEAD/DEAH box helicase domain	25	201	4.7E-45
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	385	622	-
Hamap	MF_00968	ATP-dependent RNA helicase RhlE [rhlE].	IPR028622	ATP-dependent RNA helicase RhlE	1	529	48.765705
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	IPR027417	P-loop containing nucleoside triphosphate hydrolase	24	105	1.54E-6
Gene3D	G3DSA:3.40.50.300	-	IPR027417	P-loop containing nucleoside triphosphate hydrolase	218	397	5.1E-50
FunFam	G3DSA:3.40.50.300:FF:000468	ATP-dependent RNA helicase RhlE	-	-	218	399	1.2E-93
SMART	SM00490	helicmild6	IPR001650	Helicase, C-terminal	263	344	1.7E-31
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	386	404	-
SMART	SM00487	ultradead3	IPR014001	Helicase superfamily 1/2, ATP-binding domain	20	227	5.8E-61
CDD	cd00268	DEADc	-	-	12	213	4.0596E-101

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.