Pseudomonas protegens Pf-5, PFL_5860

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0008168 methyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF004553
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008757 S-adenosylmethionine-dependent methyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.40.50.150
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0031167 rRNA methylation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF004553
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.40.50.150 Vaccinia Virus protein VP39 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase superfamily 10 205 6.3E-54
CDD cd02440 AdoMet_MTases - - 65 172 1.5262E-8
NCBIfam TIGR00095 JCVI: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD IPR004398 RNA methyltransferase, RsmD 15 200 8.6E-49
PANTHER PTHR43542 METHYLTRANSFERASE IPR004398 RNA methyltransferase, RsmD 11 201 1.2E-41
PIRSF PIRSF004553 Methylase_YhhF IPR004398 RNA methyltransferase, RsmD 21 202 1.2E-47
SUPERFAMILY SSF53335 S-adenosyl-L-methionine-dependent methyltransferases IPR029063 S-adenosyl-L-methionine-dependent methyltransferase superfamily 22 200 8.16E-45
Pfam PF03602 Conserved hypothetical protein 95 - - 22 199 4.2E-54

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.